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#Bluegriffon tutorials code#
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Try refreshing the browser multiple times. Shift + R to reload the page and override the cache. Your changes to take effect, after which you can press Control +

If not already up, open your tutorial in a browser window to see.

Note if the file is saved as an htm or html This can also be changed on the BlueGriffon editor screen

At around lines 109-112 change the name of the molecule and theĪuthors.

Replace the PDB extension in load 3gap.pdb with the.

The line that starts with var loadScript (should be

Click on the Source button near the bottom of the screen.Scroll to.

Into the dialog box then clicking on your molecule, then the index

Open index.htm in BlueGriffon, (do this by choosingįile | Open file, then typing \\bio-tutorials.

The departmental laptops have BlueGriffon installed.

Open BlueGriffon (either from the desktop or the Start menu).

#Bluegriffon tutorials download#

Usually when you initial download the PDB file it goes into a Should be at the same level as 3gap.pdb and 1cgp.pdb. Reference for instant access in the Protein Databank. Never change the name of the PDB file, as its filename provides the Copy your PDB file into your own tutorial folder.Was originally reported.) Download the correct PDB as a PDB file Make sure you know what you're getting (youĬan click on the pubmed link to find the paper where this structure There are often many different structuresįor the same protein.

#Bluegriffon tutorials code#

Looking at the code for it, but we will have replaced the structure We are doing this step now because later we will be Structure." What does it do? It shows cartoons and colors the

Push the button after the first sentence under "II.

The tutorials will not work if you simply drag the filename Note: Always open JSmol tutorials using the web address (with

Open a browser and type in the URL of your folder.

1cgp.pdb: This file contains the DNA complex that.

3gap.pdb: This is the molecule that is loaded when.

Need to change them to your own names, molecule, references, etc. Text and the JavaScript code to display the molecule.

index.htm: This file contains both the tutorial.

Your folder should have the following files: Same order you will use on your main page (i. The authors' first and last initials, all capital letters, in the Immediately with your tutorial name, which should be as follows: May get a security warning and have to click Yes). When the folder opens, create a copy of the Jmodel folder.

#Bluegriffon tutorials mac#

NOTE: On a Mac computer the slashes go in the opposite Holding down the Windows logo key and pressing R.

Open the Run dialog, either by choosing Start -> Run or by.

Report corrections or questions to Daniel Barich. Jmol and JSmol are essentially the same program, and these names are Note: JSmol is a new version of Jmol that can run without Java. This will enable you to access the networkĭrives and work on your project from off campus at the end of the The instructions to set up the virtual Science Lab Win10 virtual

Of the virtual machine for our course is ""Science Lab Win10." Follow Like a desktop or laptop, but it exists on a Kenyon server. Note: If you are off campus, you need to perform the instructions on